PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_8492576A6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 399aa    MW: 45682 Da    PI: 10.0732
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_8492576A6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.42e-12116195190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ + GF +r +ks+ +  n++  +++ vC + gk+  e+++         + r++C a +++ ++kd+ w++++ +  HnH+
  Traes_7BL_8492576A6.1 116 DFYNLYSWKKGFGIRYRKSRLN-VNRTKCMQEIVCGCAGKPIVENTR---------SCRCECPALIRLPRTKDNGWYIAEHRDGHNHA 193
                            6****************99998.555678899*******99887555.........99****************************** PP

                   FAR1  89 la 90 
                            l+
  Traes_7BL_8492576A6.1 194 LS 195
                            97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-9116195IPR004330FAR1 DNA binding domain
PfamPF105512.3E-14317375IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKVTGQWSPF GSQWPRRRRF LLQPRPGQVR XXXXXPEASG GDKAQGSEHS IEQLDPKTPG  60
WMQRVRVGAA APGRPPCADR VTTLEKTVRE FAEHPRDIVM MPKIGTSFDT LGEAYDFYNL  120
YSWKKGFGIR YRKSRLNVNR TKCMQEIVCG CAGKPIVENT RSCRCECPAL IRLPRTKDNG  180
WYIAEHRDGH NHALSQTYGQ TIHWPSHKHI DVYSKDLVKQ LRQNNVNLSK VYSIIGSFFG  240
KMENVPFTKR ALRNLCGKIS REQSEDDVRK TMEVFHDLCS KDPQFTYRVQ ADKEGRISNL  300
MWATGNSRLQ YNFFGDVITF DTTYRTNLYD MPFGLFVGVN NHFQSIILAG VLVRHETEET  360
FEWVFSEFVR IMGGRTVGLA RGLPSLGGVR RALLALART
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2955770.0JX295577.2 Aegilops tauschii chromosome 1Ds prolamin gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-153PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A096UVJ60.0A0A096UVJ6_WHEAT; Uncharacterized protein
STRINGMLOC_43923.31e-140(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-36FAR1-related sequence 10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]